Learn how environmental conditions are optimized to increase bioremediation efficacy

View a breakdown of bioremediation strategies, divided into onsite and offsite options

Depending on the contamination's complexity, in situ—onsite—options may be preferred and can include supplying oxygen or nutrients into the existing soil to accelerate the microbial breakdown already present in the environment. Ex-situ methods instead displace contamination for treatment away from the environment and may be used for volatile chemicals that require isolation, though this displacement can also spread contaminants if spilled.

An overview of bioremediation, which can help clean up oil spills, mining waste, and some plastics

The umbrella term refers to a variety of techniques that use organisms to remove harmful substances from an environment or break them down into nontoxic compounds. Because the availability of certain resources can limit the growth of these organisms and impair bioremediation efforts, nutrients such as fertilizers can be deployed to accelerate cleanup.

Comparing bioremediation with other treatment techniques, at three levels of complexity

Physical manipulation, such as collecting and moving contaminated material to a landfill, or chemical applications, which use strong, expensive substances and produce harmful byproducts, can be costly. While bioremediation leverages naturally occurring degradation processes that can be augmented without disrupting impacted ecosystems, these processes may be less effective in environments that bioremediation organisms are not adapted to.

The risks of bioremediation, from intermediate products to ecological disruption

A step in the series of complex biochemical reactions involved in the implemented bioremediation process may produce dangerous molecules—sometimes more toxic than the initial pollutants—that require ongoing monitoring to ensure optimal conditions for processing these intermediates toward the eventual, safe outputs. Introducing non-native nutrients or species, including GMOs, may alter existing food webs and gene pools.

Learn about historical uses of bioremediation, the oldest cleanup method on Earth

Biochemical reactions that decompose complex molecules into simpler ones have occurred on Earth for as long as life has existed and have gradually transformed the planet into a celestial body that is increasingly habitable to greater biodiversity. Along the way, modern, human-made bioremediation techniques began to take shape in Santa Maria, California, in the 1960s.

How the US Department of Energy facilitated bioremediation with emulsified soybean oil

At sites where soil and groundwater were identified as contaminated with volatile organic compounds, scientists and engineers at the Office of Legacy Management used microbes to safely clean them up without more invasive methods, such as pump-and-treat. Treatment zones created at one location by injecting oil to help microbes spread quickly.

The adaptations of metallophiles and how they can be harnessed for bioremediation

These extremophiles have adapted to biomes with very high concentrations of metals and toxic chemicals by developing mechanisms to isolate these substances within cellular compartments and break them down into less harmful forms with specialized proteins. They have the potential to support the decontamination of metal-rich wastewater and soil, as well as the extraction of rare-earth metals.

Examining the potential of the emerging field of insect-based bioremediation

Also known as entomoremediation, the novel approach uses larvae and adult insects, including their gut microbiomes and associated enzymes, to extract or degrade pollutants. As of 2025, research has shown that black soldier flies can degrade a wide range of antibiotics, highlighting their potential for bioremediating antibiotic-contaminated organic waste.

Biological terraforming studies have been conducted at Biosphere 2

The experiments involve populating barren hillslopes within the Landscape Evolution Observatory with microbes that react with air and rock to produce molecules needed by more complex organisms. Mosses and other simple plants can then grow in these spaces, gradually making them more hospitable to humans.

Analyzing brownfield cleanup to explain why bioremediation aligns with environmental justice

This designation applies to sites contaminated by industrial or commercial activity and that are either underutilized or abandoned. Common in economically disadvantaged communities of color, brownfields pose risks to human health and can be costly to restore. Bioremediation can be a more affordable solution that creates in-demand employment pathways in environmental science, regenerative agriculture, and ecological restoration for community members.

Why bacterial bioremediation may help counter the negative effects of past chemical solutions

Molecules such as DDT, a synthetic insecticide, and PFAS—"forever" chemicals used to make products resistant to heat, water, and grease—have historically been used across various industries but are now known to be harmful. Microbes that can convert some of these substances into nontoxic products, such as water and carbon dioxide, have already been identified, with ongoing research to find others.

How microbes limited the damage and helped clean up the Deepwater Horizon oil spill

A bloom estimated to contain about 100 sextillion microbial cells broke down much of the 4.1 million barrels of spilled crude oil into nontoxic compounds in what was one of the most significant bioremediations of a human-made disaster. The microbes involved acted similarly to the first patented genetically modified organism in US history: an oil-eating bacterium engineered in 1971.

A visualization of mycoremediation, where fungi extract toxic and radioactive pollutants from soil

As organisms such as mushrooms grow, they develop large networks of root-like structures called mycelium that spread underground and release enzymes that break down contaminants. By absorbing these chemicals, fungi limit the damage caused by these toxins and localize them within the organism for easier collection and disposal.

Microbial research suggests shifts in diverse populations may help an invasive species establish itself

In 1958, English ecologist Charles Elton suggested that diverse ecosystems should be more resistant to invasive species because gaining a foothold would be more challenging when resources are more thinly spread. However, in lab-grown microbial ecosystems with greater biodiversity, population volatility opened more ecological roles that invasive species could easily fill.

Watch students comically portray how plants can detoxify the environment

Through a series of processes that collectively make up phytoremediation, plants can take up pollutants from soil and water through their roots, then break them down, release them as less harmful gases, or store them within their cells. Any plants that sequester heavy metals or other toxins must be removed and managed after the environment is decontaminated.

The use of fungi to detoxify land and water—a process known as mycoremediation—has been used to clean up natural resources affected by the 2025 California wildfires.

Why extremophiles may play an important role in terraforming Mars

Possessing unique biochemicals that can detoxify extreme environments and resilience against the Martian surface that is lethal to humans, scientists are exploring whether colonies of these organisms can transform small areas of the Red Planet into future habitats for humans. Extremophiles may also be best equipped to serve as microscopic factories for the fabrication of essential polymers.

View the industrial applications of extremozymes, from food safety to antibiotic production

Extremophiles possess unique enzymes and organic molecules that have enabled them to adapt to and thrive in otherwise lethal environments. Because these conditions resemble those found in various areas of manufacturing and production plants, these organisms and their macromolecules can optimize industrial processes where conventional catalysts would lose their ability to speed up reactions.

Astronauts on the International Space Station have tested an algae-powered bioreactor that converts carbon dioxide, water, and light into oxygen and edible, protein-rich biomass.

Advances in agriculture are being powered by CRISPR to boost carbon capture

Researchers are using CRISPR to test thousands of plant gene edits, aiming to speed up breeding and maximize carbon retention in soil. By engineering drought tolerance, they also aim to increase crop yields and expand the environments where crops can grow.

How scientists are using molecules found in acidophiles to develop new medical treatments

The Berkeley Pit, an open-pit copper mine in Butte, Montana, that ceased operations in 1982 and is now filled with highly acidic water, is home to various species of fungi and yeast. These extremophiles produce unique compounds that may have anti-inflammatory benefits and have already been used to create an antibiotic for staph infections.

How MIT researchers have used genetic mutations to improve photosynthesis efficiency

Recognizing that RuBisCO—a protein that binds carbon dioxide to other compounds to produce the building blocks of organic molecules—often mistakenly binds oxygen, scientists performed directed evolution experiments to modify the geometry of a bacterial version of the protein to cause it to preferentially interact with carbon dioxide over oxygen.

Biohacking: The effort to optimize health and extend life through technology

Biohacking seeks to optimize human health and performance through everything from simple lifestyle adjustments to more radical interventions like body modifications and experimental technology. At its core, biohacking covers a wide spectrum—ranging from improving sleep and focus to implanting devices that integrate technology with the human body.

Breaking down the challenges of alkaline environments and how extremophiles survive them

These areas are far less acidic than the interiors of most organisms' cells, and this imbalance draws protons that are needed for various metabolic processes, including energy production, out of cells. To counter these effects, some alkaliphiles have developed stronger proton regulation across their cellular membranes and proteins that drive these processes with greater stability amid such acidity imbalances.

Some algae have helped remove microplastics from water after being bioengineered to clump together with these contaminants, forming an easily collectible microplastic-algae sludge.

Most plastics are not biodegradable because breaking their chemical bonds requires temperatures lethal to most microbes, and these organisms have not been exposed to plastic long enough to evolve the necessary enzymes.

Agrivoltaic solutions are tested in the land around the Biosphere 2 complex

The experiments involve identifying conditions needed to grow plants beneath solar panels, which protect the plants from the harsh sunlight of the Arizona desert. Research includes a citizen science component, where satellite gardens have been installed in nearby high schools.

An overview of extremophiles and the biochemical adaptations employed by various types

These organisms thrive in environments that would normally be inhospitable to most living things by using molecules that help counter deadly environmental factors. These include antifreeze-like proteins that prevent psychrophiles from freezing and rupturing in polar regions, and osmoprotectants that prevent some extremophiles from losing water to salty environments.

Gut bacteria are evolving and can acquire as many as 100 new genes per year, on average.

My experience with biohacking

A general approach that employs technology to enhance the functioning of the human body, biohacking enthusiasts are continuously seeking new ways to optimize their performance. Martin Kremmer, an entrepreneur who became interested in the topic after experiencing burnout, explores his own experiences in biohacking his own diet and lifestyle in pursuit of a longer, healthier life.

While invasive species typically harm ecosystems by outcompeting native organisms for resources, some provide unexpected benefits, including new shelters, nesting habitats, and reduced environmental heat stress.

Bioluminescence may provide a sustainable alternative to electric lighting

French start-up Glowee is experimenting with lights made from bioluminescent microorganisms in public spaces to reduce energy use. While the technology shows promise, challenges remain with brightness, maintenance, and scaling it for widespread use.

Greenhouse gas removal consists of a series of techniques to capture and store GHGs

These include turning biomass into charcoal for storage in soil before it decays and releases carbon dioxide, crushing CO₂-absorbing rocks—increasing exposed surface area—and spreading them across land to accelerate GHG uptake, and restoring degraded peatlands, which can store twice the amount of carbon as the average forest.

Genetic engineering has accelerated millennia of altering various crops' genes

Although farmers have long cross-bred crops to obtain plants with specific colors, sizes, and other characteristics, these processes took significant time. Today, genetic modification in agriculture involves scientists altering an organism's DNA for various purposes, including enhancing pathogen resistance, removing allergens, and delaying spoilage.

The term 'symbiosis' was coined during the study of lichens—composite organisms in which algae or cyanobacteria partner with a fungus, alongside bacteria.

Synthetic biology can prevent extinction by creating create disease-resilient plants and animals

Through gene editing and the deployment of artificial cells, scientists can leverage learnings from the genetic sequencing of animals with known resistances to protect endangered species. Gene editing of certain species, such as mosquitoes, can also reduce their ability to spread diseases like malaria between humans.

How the Supreme Court established biotechnology patent law with an oil-eating microbe

While working at General Electric, microbiologist Ananda Chakrabarty engineered a strain of Pseudomonas that could break down multiple types of hydrocarbons and filed a patent on the bioremediation organism. Despite challenges over whether living things could be patented, the 5-4 decision held that genetically modified organisms could be patented because they were human-made inventions.

Why the existence of extremophiles greatly improves the odds of life beyond Earth

The conditions for life have long been thought to include liquid water, an energy source, and the essential elements for organic molecules within environments on or near Earth's surface. However, because extremophiles thrive in far more inhospitable environments, astronomers now analyze exoplanets whose characteristics indicate environments that fall within a broader range of possibilities when searching for signs of extraterrestrial life.

In Amsterdam, planting organic flowers has increased native bee diversity by 45%

The citywide effort is an example of rethinking conventional agricultural methods, which rely on monocropping and heavy chemical use. Cover crops—plants grown to suppress weeds, prevent erosion, and attract pollinators rather than to be harvested—have also shown environmental benefits, despite not being sold for profit.

Recombinant DNA technology turns microorganisms into protein factories

Genes for molecules such as insulin can be inserted into loops of bacterial DNA called plasmids and reinserted into bacteria. Once placed in fermentation tanks, these bacteria use the gene to produce these molecules, which are then harvested and purified for eventual use.

Appropriate timing of land management techniques can help support pollinators

The mowing, grazing, and burning practices used to maintain land should be tailored to the life cycles and needs of native pollinators, particularly those of rare or endangered species. For example, mowing is recommended in the fall or winter when flowers are not in bloom.

Explore a timeline of Brownfields and land revitalization programs

Brownfields are properties where redevelopment is complicated by contamination from past industrial or commercial use. The EPA's Brownfields Program funds cleanup and reuse of these sites, transforming abandoned lots into housing, parks, and businesses while boosting local economies.

How are scientists turning deserts into farmland?

This article explores how engineers are using a liquid nanoclay solution to transform barren deserts into productive fruit farms, drawing inspiration from how clay particles carried by floodwaters in the Nile Delta used to improve the fertility of...

Explaining deep-sea mining, including its economic benefits and potential biomedical risks

Extraction via machines sweeping the ocean floor would reduce child labor and human rights violations currently occurring in land-based operations that collect the minerals needed for modern-day electronics. However, these sweeps may kill undiscovered organisms that possess biologies from which antibiotics could be derived and destabilize deep-sea ecosystems.

Fungi have been used to restore island habitats in the central Pacific

After removing 1.5 million invasive coconut palm trees and eradicating the black rats that fed on them, as well as seabirds and crabs, conservationists working with the US Fish and Wildlife Service identified areas where fungi could be transplanted to provide nutrients to native trees. These trees serve as nesting sites for seabirds whose guano nourishes coral reefs.

Before Biosphere 2, the Soviet BIOS-3 system tested semi-closed ecosystems

Built from 1965 to 1972, the habitat hosted 10 experiments with crews ranging from one to three individuals who had their air recycled by algae and grew their own wheat and vegetables. However, dried meats were routinely brought into the facility to balance crew members’ diets.

Environmental DNA monitoring can help detect the presence of invasive species

Genetic material that organisms deposit into water, soil, or air can be identified by analyzing samples from each environment, allowing land managers to more reliably detect and track organisms than visual surveys alone. eDNA has been used to develop early warning surveillance systems for various invasive marine species.

See examples of hyperaccumulators, the plants that can harvest heavy metals

These ideal species for phytoremediation possess biochemistry that allows them to absorb and store these elements without being poisoned by their accumulation. Pycnandra acuminata, one such plant, has blue-green sap due to an abundance of nickel, which it captures from the nickel-rich soil in which it grows.

What is biohacking? An overview

Biohacking is a broad collection of self-improvement techniques meant to enhance a human's health, lifespan, or ability. There are basic biohacks, like the use of caffeine, and more extreme ones, like under-the-skin implants. The difference between biohacking and standard medicine is that biohacking is primarily a do-it-yourself approach and is mostly unregulated.

Benign species can become invasive if introduced into predator-free habitats

Most ecosystems contain organisms that, over many generations, have evolved into a stable balance with one another and their surroundings. In a new environment, a species may no longer be restricted by the limiting factors it is used to, and the native organisms in the area may not adapt quickly enough to the invader to establish a new balance.