How the US Department of Energy facilitated bioremediation with emulsified soybean oil

How microbes limited the damage and helped clean up the Deepwater Horizon oil spill

A bloom estimated to contain about 100 sextillion microbial cells broke down much of the 4.1 million barrels of spilled crude oil into nontoxic compounds in what was one of the most significant bioremediations of a human-made disaster. The microbes involved acted similarly to the first patented genetically modified organism in US history: an oil-eating bacterium engineered in 1971.

View a breakdown of bioremediation strategies, divided into onsite and offsite options

Depending on the contamination's complexity, in situ—onsite—options may be preferred and can include supplying oxygen or nutrients into the existing soil to accelerate the microbial breakdown already present in the environment. Ex-situ methods instead displace contamination for treatment away from the environment and may be used for volatile chemicals that require isolation, though this displacement can also spread contaminants if spilled.

An overview of bioremediation, which can help clean up oil spills, mining waste, and some plastics

The umbrella term refers to a variety of techniques that use organisms to remove harmful substances from an environment or break them down into nontoxic compounds. Because the availability of certain resources can limit the growth of these organisms and impair bioremediation efforts, nutrients such as fertilizers can be deployed to accelerate cleanup.

Learn how environmental conditions are optimized to increase bioremediation efficacy

Through biostimulation, Indigenous microbes are provided with moisture, nutrients, or oxygen to prevent their death and ensure optimal progression of their biochemical reactions. Bioaugmentation can introduce new microbial cultures to target specific compounds not natively found in the environment, while landfarming can spread or aerate contaminated soil to improve access to contaminants.

Comparing bioremediation with other treatment techniques, at three levels of complexity

Physical manipulation, such as collecting and moving contaminated material to a landfill, or chemical applications, which use strong, expensive substances and produce harmful byproducts, can be costly. While bioremediation leverages naturally occurring degradation processes that can be augmented without disrupting impacted ecosystems, these processes may be less effective in environments that bioremediation organisms are not adapted to.

Why bacterial bioremediation may help counter the negative effects of past chemical solutions

Molecules such as DDT, a synthetic insecticide, and PFAS—"forever" chemicals used to make products resistant to heat, water, and grease—have historically been used across various industries but are now known to be harmful. Microbes that can convert some of these substances into nontoxic products, such as water and carbon dioxide, have already been identified, with ongoing research to find others.

Learn about historical uses of bioremediation, the oldest cleanup method on Earth

Biochemical reactions that decompose complex molecules into simpler ones have occurred on Earth for as long as life has existed and have gradually transformed the planet into a celestial body that is increasingly habitable to greater biodiversity. Along the way, modern, human-made bioremediation techniques began to take shape in Santa Maria, California, in the 1960s.

The cleanup of oil and other chemical spills involves a combination of methods tailored to different settings, including vacuuming, dispersing absorbent materials, chemicals, or biological agents, and localized burning.

Examining the potential of the emerging field of insect-based bioremediation

Also known as entomoremediation, the novel approach uses larvae and adult insects, including their gut microbiomes and associated enzymes, to extract or degrade pollutants. As of 2025, research has shown that black soldier flies can degrade a wide range of antibiotics, highlighting their potential for bioremediating antibiotic-contaminated organic waste.

Analyzing brownfield cleanup to explain why bioremediation aligns with environmental justice

This designation applies to sites contaminated by industrial or commercial activity and that are either underutilized or abandoned. Common in economically disadvantaged communities of color, brownfields pose risks to human health and can be costly to restore. Bioremediation can be a more affordable solution that creates in-demand employment pathways in environmental science, regenerative agriculture, and ecological restoration for community members.

Learn about unconventional ways to clean up crude oil, including using moss and chickens

Studies show that microorganisms in chicken manure can break down the hydrocarbons in crude oil without producing toxic by-products. Scientists have also explored avoiding the environmental risks of chemical dispersants and synthetic adsorbents by using human hair and peat moss to adsorb crude oil, which can be taken up by their cuticles and porous structures, respectively.

The risks of bioremediation, from intermediate products to ecological disruption

A step in the series of complex biochemical reactions involved in the implemented bioremediation process may produce dangerous molecules—sometimes more toxic than the initial pollutants—that require ongoing monitoring to ensure optimal conditions for processing these intermediates toward the eventual, safe outputs. Introducing non-native nutrients or species, including GMOs, may alter existing food webs and gene pools.

The use of fungi to detoxify land and water—a process known as mycoremediation—has been used to clean up natural resources affected by the 2025 California wildfires.

Watch students comically portray how plants can detoxify the environment

Through a series of processes that collectively make up phytoremediation, plants can take up pollutants from soil and water through their roots, then break them down, release them as less harmful gases, or store them within their cells. Any plants that sequester heavy metals or other toxins must be removed and managed after the environment is decontaminated.

The adaptations of metallophiles and how they can be harnessed for bioremediation

These extremophiles have adapted to biomes with very high concentrations of metals and toxic chemicals by developing mechanisms to isolate these substances within cellular compartments and break them down into less harmful forms with specialized proteins. They have the potential to support the decontamination of metal-rich wastewater and soil, as well as the extraction of rare-earth metals.

A visualization of mycoremediation, where fungi extract toxic and radioactive pollutants from soil

As organisms such as mushrooms grow, they develop large networks of root-like structures called mycelium that spread underground and release enzymes that break down contaminants. By absorbing these chemicals, fungi limit the damage caused by these toxins and localize them within the organism for easier collection and disposal.

Explore how close you live to some of the most contaminated places in the US

Known as Superfund sites, these toxic locations undergo long-term cleanup to remove hazardous waste, protect health, and restore land for safe reuse. As of 2025, the EPA lists around 1,300 active Superfund sites on its National Priorities List, with more than 450 cleaned and removed since 1980.

How a polluted New York City waterway created extremophiles hungry for 'black mayonnaise'

In the 19th century, coal processing plants, oil refineries, a tannery, and other industries lining the Gowanus Canal contaminated its waters with coal tar, sewage, and other pollutants, forming the toxic sludge. Samples taken from the site before clean-up efforts revealed over 450 species of microbes with metabolisms adapted to break down these contaminants.

How the Supreme Court established biotechnology patent law with an oil-eating microbe

While working at General Electric, microbiologist Ananda Chakrabarty engineered a strain of Pseudomonas that could break down multiple types of hydrocarbons and filed a patent on the bioremediation organism. Despite challenges over whether living things could be patented, the 5-4 decision held that genetically modified organisms could be patented because they were human-made inventions.

Biological terraforming studies have been conducted at Biosphere 2

The experiments involve populating barren hillslopes within the Landscape Evolution Observatory with microbes that react with air and rock to produce molecules needed by more complex organisms. Mosses and other simple plants can then grow in these spaces, gradually making them more hospitable to humans.

Explore a timeline of Brownfields and land revitalization programs

Brownfields are properties where redevelopment is complicated by contamination from past industrial or commercial use. The EPA's Brownfields Program funds cleanup and reuse of these sites, transforming abandoned lots into housing, parks, and businesses while boosting local economies.

While major oil spills result from accidental pipeline ruptures or damage to transportation vessels or rigs, as much as half the oil that reaches coastlines has naturally leaked from the seafloor.

Most plastics are not biodegradable because breaking their chemical bonds requires temperatures lethal to most microbes, and these organisms have not been exposed to plastic long enough to evolve the necessary enzymes.

View the industrial applications of extremozymes, from food safety to antibiotic production

Extremophiles possess unique enzymes and organic molecules that have enabled them to adapt to and thrive in otherwise lethal environments. Because these conditions resemble those found in various areas of manufacturing and production plants, these organisms and their macromolecules can optimize industrial processes where conventional catalysts would lose their ability to speed up reactions.

Mining of rare earth elements risks leaking radioactive wastewater

The extraction and processing of REEs requires significant amounts of water, and poorly regulated projects can contaminate groundwater with acids and heavy metals. Toxic waste spills have paused work in several US mines since the 1980s, despite growing REE demand.

Some algae have helped remove microplastics from water after being bioengineered to clump together with these contaminants, forming an easily collectible microplastic-algae sludge.

Explaining the engineering challenges of extracting metal-rich nodules from the seafloor

Proposed solutions for collecting these potato-shaped rocks involve lifting a slurry composed of them, organic debris, and water through several kilometers of flexible tubing to a ship on the surface, a process that is more difficult than pumping crude oil. One method would use compressed air, but this method is only 15% energy-efficient.

How scientists are using molecules found in acidophiles to develop new medical treatments

The Berkeley Pit, an open-pit copper mine in Butte, Montana, that ceased operations in 1982 and is now filled with highly acidic water, is home to various species of fungi and yeast. These extremophiles produce unique compounds that may have anti-inflammatory benefits and have already been used to create an antibiotic for staph infections.

Although PFAS, or forever chemicals, are intentionally designed to be extremely stable and long-lasting because of their strong carbon-fluorine bonds, these bonds can be broken by heat, plasma, and supercritical water.

The 1969 Santa Barbara oil spill galvanized the modern environmental movement

In January 1969, an oil platform off the coast of Santa Barbara ruptured, releasing roughly 3 million gallons of crude into the Pacific. The spill killed over 10,000 seabirds, dolphins, and seals, coating 35 miles of coastline.

Many chemicals used in fracking fluid have been classified as toxic

Although the fluid has been known to leach into drinking water supplies, raising health concerns, fracking is exempt from federal clean water regulations due to a loophole in the Energy Policy Act of 2005 championed by former US Vice President Dick Cheney.

Decommissioned oil rigs have been repurposed into artificial reefs that serve as nursery habitats for fish, corals, sponges, and other invertebrates in the decades since their installation.

Environmental DNA monitoring can help detect the presence of invasive species

Genetic material that organisms deposit into water, soil, or air can be identified by analyzing samples from each environment, allowing land managers to more reliably detect and track organisms than visual surveys alone. eDNA has been used to develop early warning surveillance systems for various invasive marine species.

Odor blockers use nonpolar oils to trap smelly polar molecules

In the case of feces, gut bacteria produce compounds such as skatole and hydrogen sulfide, which the brain registers as unpleasant. Because oils do not dissolve in water, they can be used to create a layer on the surface that prevents smelly compounds underwater from escaping into the air.

Why extremophiles may play an important role in terraforming Mars

Possessing unique biochemicals that can detoxify extreme environments and resilience against the Martian surface that is lethal to humans, scientists are exploring whether colonies of these organisms can transform small areas of the Red Planet into future habitats for humans. Extremophiles may also be best equipped to serve as microscopic factories for the fabrication of essential polymers.

Scientists have collected critical minerals from ocean water using seaweed, a type of algae that leaves behind a mineral-rich powder called bio-ore after being processed into biofuels.

Sunflowers have long been a symbol of nuclear disarmament because they can extract large amounts of radioactive cesium from soil.

Geothermal power can reduce the dangerous mining of rare earth elements

Geothermal brines—mineral-rich underground fluids extracted for use in geothermal plants—contain small concentrations of REEs that can be recovered after energy generation. Although researchers suggest that this retrieval requires complex extraction methods at a significant scale to account for high flow rates, the chemical processes also occur in traditional REE processing.

The Office of Chemical Safety and Pollution Prevention regulates toxic substances

This office evaluates and manages risks from industrial chemicals and pesticides. It reviews new chemicals before they enter the market, restricts hazardous substances, and promotes safer alternatives to protect human health and the environment.

Before Biosphere 2, the Soviet BIOS-3 system tested semi-closed ecosystems

Built from 1965 to 1972, the habitat hosted 10 experiments with crews ranging from one to three individuals who had their air recycled by algae and grew their own wheat and vegetables. However, dried meats were routinely brought into the facility to balance crew members’ diets.

Greenhouse gas removal consists of a series of techniques to capture and store GHGs

These include turning biomass into charcoal for storage in soil before it decays and releases carbon dioxide, crushing CO₂-absorbing rocks—increasing exposed surface area—and spreading them across land to accelerate GHG uptake, and restoring degraded peatlands, which can store twice the amount of carbon as the average forest.

Astronauts on the International Space Station have tested an algae-powered bioreactor that converts carbon dioxide, water, and light into oxygen and edible, protein-rich biomass.

How scientists are improving on photosynthesis

Researchers increased yield in soy plants by making them better at photosynthesis, the process that powers life. The findings hold promise for feeding a warming world.

The EPA partners with other countries to strengthen environmental protection

Through bilateral programs on every continent, the EPA shares American environmental expertise with developing nations and economies in transition. These partnerships support air and water protection, chemical safety, and pollution control, while advancing US environmental priorities abroad.

Rare earth elements may be extracted from mine waste and coal ash

Rather than focusing solely on new mining operations, which can take decades to establish, some startups are developing methods to extract these metals from the toxic waste of existing operations and thereby minimize environmental impacts. (Some readers may experience a paywall.)

Landfills capture methane gas and convert it into usable energy

As organic waste breaks down underground, it produces landfill gas that is roughly 50% methane. That gas can be captured and used to generate electricity or provide heat for nearby homes and businesses.

Watch how deep-sea mining equipment collects and processes polymetallic nodules—metal-rich, potato-shaped rocks—from the ocean floor and creates environmentally damaging plumes of sediments.

A guide to crude oil and natural gas extraction, from rig site preparation to land restoration

Requirements for traffic plans, access roads, and noise barriers vary by state and local laws, but once the rig site is prepared, the rig is assembled and digs a well that is then encased in steel and cement to protect groundwater reservoirs. After drilling and testing the extraction pipe, fracking fluid is injected into the rock to create cracks where crude oil resides, allowing it to be pumped out.

How spoiled meat helped uncover a bacterium that can survive the vacuum of space

When a can of ground beef and pork spoiled despite attempts to sterilize it with gamma radiation, researcher Arthur Anderson isolated the bacteria in the food and discovered Deinococcus radiodurans. The polyextremophile has since been found on the walls of nuclear reactors and overcomes radiation damage through highly optimized DNA repair mechanisms.

The environmental crises of the late 1960s led to the founding of the EPA

Disasters such as the Cuyahoga River fire and the Santa Barbara oil spill prompted Congress and President Nixon to establish the Environmental Protection Agency in December 1970, with the goal of unifying federal efforts to control pollution.