How a polluted New York City waterway created extremophiles hungry for 'black mayonnaise'

How microbes limited the damage and helped clean up the Deepwater Horizon oil spill

A bloom estimated to contain about 100 sextillion microbial cells broke down much of the 4.1 million barrels of spilled crude oil into nontoxic compounds in what was one of the most significant bioremediations of a human-made disaster. The microbes involved acted similarly to the first patented genetically modified organism in US history: an oil-eating bacterium engineered in 1971.

The sewage of New York City

Residents of the five boroughs of New York produce 1.3 billion gallons of wastewater everyday. Seventy miles of sewer pipes, first built in the mid-1800s, feed the sewage to 14 wastewater treatment and recovery plants where the waste is treated back to viable, drinkable water. See what shouldn't go down the toilet here.

The Love Canal disaster exposed the dangers of buried toxic waste

In the late 1970s, residents of Niagara Falls, New York, discovered their neighborhood was built atop 20,000 tons of chemical waste. Leaking toxins caused illness and birth defects, sparking nationwide outrage and leading to the creation of the EPA's Superfund cleanup program in 1980.

Why bacterial bioremediation may help counter the negative effects of past chemical solutions

Molecules such as DDT, a synthetic insecticide, and PFAS—"forever" chemicals used to make products resistant to heat, water, and grease—have historically been used across various industries but are now known to be harmful. Microbes that can convert some of these substances into nontoxic products, such as water and carbon dioxide, have already been identified, with ongoing research to find others.

How the US Department of Energy facilitated bioremediation with emulsified soybean oil

At sites where soil and groundwater were identified as contaminated with volatile organic compounds, scientists and engineers at the Office of Legacy Management used microbes to safely clean them up without more invasive methods, such as pump-and-treat. Treatment zones created at one location by injecting oil to help microbes spread quickly.

How scientists are using molecules found in acidophiles to develop new medical treatments

The Berkeley Pit, an open-pit copper mine in Butte, Montana, that ceased operations in 1982 and is now filled with highly acidic water, is home to various species of fungi and yeast. These extremophiles produce unique compounds that may have anti-inflammatory benefits and have already been used to create an antibiotic for staph infections.

Before modern sanitation, New York City let pigs roam the streets to eat its garbage

In the early 1820s, an estimated 20,000 hogs roamed Manhattan's streets, feeding on trash that the city lacked a system to collect. Pigs were eventually banned at the urging of wealthy residents, who feared they would deter tourists and drive down property values.

In the 1800s, the carcasses of the many horses that died transporting city residents were dumped in a bay in New York City.

Learn about unconventional ways to clean up crude oil, including using moss and chickens

Studies show that microorganisms in chicken manure can break down the hydrocarbons in crude oil without producing toxic by-products. Scientists have also explored avoiding the environmental risks of chemical dispersants and synthetic adsorbents by using human hair and peat moss to adsorb crude oil, which can be taken up by their cuticles and porous structures, respectively.

The adaptations of metallophiles and how they can be harnessed for bioremediation

These extremophiles have adapted to biomes with very high concentrations of metals and toxic chemicals by developing mechanisms to isolate these substances within cellular compartments and break them down into less harmful forms with specialized proteins. They have the potential to support the decontamination of metal-rich wastewater and soil, as well as the extraction of rare-earth metals.

View the industrial applications of extremozymes, from food safety to antibiotic production

Extremophiles possess unique enzymes and organic molecules that have enabled them to adapt to and thrive in otherwise lethal environments. Because these conditions resemble those found in various areas of manufacturing and production plants, these organisms and their macromolecules can optimize industrial processes where conventional catalysts would lose their ability to speed up reactions.

The discovery of the first extremophile and how it revolutionized DNA analysis

While investigating samples taken from within and around the hot springs at Yellowstone National Park, microbiologist Thomas Brock discovered Thermus aquaticus, a microorganism that thrived in hot water. It contained an enzyme called Taq polymerase, a critical molecule in polymerase chain reaction—a molecular photocopier that amplifies genetic signals to improve medical diagnostics.

Cleveland's Cuyahoga River caught fire over a dozen times

Between 1868 and 1969, the Cuyahoga River in Cleveland caught fire at least 13 times due to oil and industrial waste. The 1969 blaze garnered national attention, prompting federal action and contributing to the creation of the EPA, which ultimately led to a successful cleanup of the river.

Microplastics are entering human food chains through carrots, wheat, and other foodstuffs grown in farmlands fertilized by sewage sludge.

The canal carried germs as well as goods

In 1832, North America’s first cholera epidemic spread inland by way of the Erie Canal, carried by immigrants arriving on ships. Fearful towns barred passengers from disembarking, yet cholera, smallpox, and other diseases still traveled the waterway.

A look at hydrothermal vents, where barophiles and hyperthermophiles survive boiling water

Discovered in 1977 during an exploration of the Galapagos Rift, these seafloor openings spew hot magma and chemicals that heat seawater to hundreds of degrees. Without the sunlight found at depths of less than 1,000 meters (3,281 feet), extremophiles in these environments convert released chemicals into energy to survive, alongside surviving extreme pressures.

The risks of bioremediation, from intermediate products to ecological disruption

A step in the series of complex biochemical reactions involved in the implemented bioremediation process may produce dangerous molecules—sometimes more toxic than the initial pollutants—that require ongoing monitoring to ensure optimal conditions for processing these intermediates toward the eventual, safe outputs. Introducing non-native nutrients or species, including GMOs, may alter existing food webs and gene pools.

In the late 1800s, New York City streets were covered with millions of pounds of horse manure thanks to a widespread horse-driven transportation industry.

What revisiting a 1979 experiment reveals about ecosystem recovery after deep-sea mining

A 2023 study co-led by the National Oceanography Centre and the Natural History Museum, London, found that tracks made by the mining vehicle remained largely unchanged since 1979. Small animals, such as amoeba-like xenophyophore, were seen in the cleared areas, but sightings of larger animals known to live in the region were much rarer. (Some readers may experience a paywall.)

How the Supreme Court established biotechnology patent law with an oil-eating microbe

While working at General Electric, microbiologist Ananda Chakrabarty engineered a strain of Pseudomonas that could break down multiple types of hydrocarbons and filed a patent on the bioremediation organism. Despite challenges over whether living things could be patented, the 5-4 decision held that genetically modified organisms could be patented because they were human-made inventions.

Explore how close you live to some of the most contaminated places in the US

Known as Superfund sites, these toxic locations undergo long-term cleanup to remove hazardous waste, protect health, and restore land for safe reuse. As of 2025, the EPA lists around 1,300 active Superfund sites on its National Priorities List, with more than 450 cleaned and removed since 1980.

Forever chemicals accumulate up the food web, with recent research indicating that apex predators have higher concentrations because they're eating prey that also have accumulated the substances.

View the rainbow effect on the waters at First Landing State Park

The phenomenon results from light interacting with a thin film of natural oils on the surface of swamps and marshes at the site, not unlike the coloration seen in soap bubbles. The oils originate from decaying vegetation or from anaerobic bacteria reducing iron in soil. (Some readers may experience a paywall.)

How spoiled meat helped uncover a bacterium that can survive the vacuum of space

When a can of ground beef and pork spoiled despite attempts to sterilize it with gamma radiation, researcher Arthur Anderson isolated the bacteria in the food and discovered Deinococcus radiodurans. The polyextremophile has since been found on the walls of nuclear reactors and overcomes radiation damage through highly optimized DNA repair mechanisms.

Harmful algal blooms can occur in warm, nutrient-rich, stagnant waters and are often associated with the rapid reproduction of blue-green algae—a misnomer for cyanobacteria, not algae.

The use of fungi to detoxify land and water—a process known as mycoremediation—has been used to clean up natural resources affected by the 2025 California wildfires.

Listen to how the 1902 'poison squad' experiments changed food safety in America

As part of government research, a group of young men were paid to eat standard American food—replete with food additives like borax and formaldehyde—which revealed the dangers of unregulated food. The work was led by the first FDA commissioner, Harvey Wiley, who helped end the "century of the great stomachache."

Examining the potential of the emerging field of insect-based bioremediation

Also known as entomoremediation, the novel approach uses larvae and adult insects, including their gut microbiomes and associated enzymes, to extract or degrade pollutants. As of 2025, research has shown that black soldier flies can degrade a wide range of antibiotics, highlighting their potential for bioremediating antibiotic-contaminated organic waste.

Listen to a reporter discuss his story spotlighting a decadeslong corporate cover-up about forever chemicals, substances, which can persist in the environment for hundreds of years—though not forever.

Essential pipes, sewers, and cables lie buried beneath New York City

The Department of Design and Construction offers a tour of its work sites, explaining the complex systems that exist underground. Gas, electrical, telecom pipes, and many others, sprawl out underneath the entire city, with dozens of maps that help workers know where they're placed. This layout is unusual compared to the rest of the country, where wires are often present and visible above ground.

A visualization of mycoremediation, where fungi extract toxic and radioactive pollutants from soil

As organisms such as mushrooms grow, they develop large networks of root-like structures called mycelium that spread underground and release enzymes that break down contaminants. By absorbing these chemicals, fungi limit the damage caused by these toxins and localize them within the organism for easier collection and disposal.

New York City spends $429 million a year just to get rid of its trash

None of NYC's garbage is processed within the city. It is transported by truck, train, and barge to waste-to-energy facilities and landfills as far away as Ohio and South Carolina, a vast logistical operation.

The warmest waters in the ocean are found at hydrothermal vents—hot springs on the seafloor that discharge plumes of mineral-rich water.

The cleanup of oil and other chemical spills involves a combination of methods tailored to different settings, including vacuuming, dispersing absorbent materials, chemicals, or biological agents, and localized burning.

Most plastics are not biodegradable because breaking their chemical bonds requires temperatures lethal to most microbes, and these organisms have not been exposed to plastic long enough to evolve the necessary enzymes.

Analyzing brownfield cleanup to explain why bioremediation aligns with environmental justice

This designation applies to sites contaminated by industrial or commercial activity and that are either underutilized or abandoned. Common in economically disadvantaged communities of color, brownfields pose risks to human health and can be costly to restore. Bioremediation can be a more affordable solution that creates in-demand employment pathways in environmental science, regenerative agriculture, and ecological restoration for community members.

The Erie Canal transformed New York City into America’s banking capital

By redirecting western trade through New York Harbor, the canal turned New York into the nation’s commercial hub. This surge in commerce shifted financial power from Philadelphia to Wall Street, establishing the city as America’s banking capital.

Learn how environmental conditions are optimized to increase bioremediation efficacy

Through biostimulation, Indigenous microbes are provided with moisture, nutrients, or oxygen to prevent their death and ensure optimal progression of their biochemical reactions. Bioaugmentation can introduce new microbial cultures to target specific compounds not natively found in the environment, while landfarming can spread or aerate contaminated soil to improve access to contaminants.

Watch how deep-sea mining equipment collects and processes polymetallic nodules—metal-rich, potato-shaped rocks—from the ocean floor and creates environmentally damaging plumes of sediments.

In 1892, two scientists purposefully infected themselves with cholera bacteria

When they became ill—one with mild diarrhea and the other with severe cholera—researchers pointed to that as proof that the pathogen caused the disease.

Learn about historical uses of bioremediation, the oldest cleanup method on Earth

Biochemical reactions that decompose complex molecules into simpler ones have occurred on Earth for as long as life has existed and have gradually transformed the planet into a celestial body that is increasingly habitable to greater biodiversity. Along the way, modern, human-made bioremediation techniques began to take shape in Santa Maria, California, in the 1960s.

As of 2026, the Great Atlantic Sargassum Belt is the world's largest macroalgal bloom, with seaweed stretching from the Caribbean to West Africa.

The wonderfully named Vibrio diabolicus is a cousin of the cholera-causing bacterium

This bacterium, which belongs to the same genus as the cholera bacterium, was initially isolated from deep-sea hydrothermal fields. It was sampled from water that was scooped up during a French-American cruise in October 1991.

On a cruise ship, the average person uses about 50 gallons of water a day, which is treated by bacteria and onboard filtration systems, then stored until the ship can legally discharge the wastewater.

Why extremophiles may play an important role in terraforming Mars

Possessing unique biochemicals that can detoxify extreme environments and resilience against the Martian surface that is lethal to humans, scientists are exploring whether colonies of these organisms can transform small areas of the Red Planet into future habitats for humans. Extremophiles may also be best equipped to serve as microscopic factories for the fabrication of essential polymers.

Despite the misconception that it comes from dinosaurs, crude oil forms when microorganisms, such as algae and plankton, are subjected to high pressure and high temperature while buried under layers of sediment.

Some algae have helped remove microplastics from water after being bioengineered to clump together with these contaminants, forming an easily collectible microplastic-algae sludge.

How the methods of catching fish for food affects their taste

Commercially caught fish are often killed through suffocation, allowing the causing the fish extreme stress and flooding their bodies with stress hormones and lactic acid. These chemicals cause the fish's flesh to become bitter where it was once rich and quickens the rotting process.

While major oil spills result from accidental pipeline ruptures or damage to transportation vessels or rigs, as much as half the oil that reaches coastlines has naturally leaked from the seafloor.

Scientists have found that sewage sludge used as fertilizer introduces various microplastics into soil, which persist in farmland for decades.